General
PromptBeginner5 minmarkdownQuality: 24
- `axis(side
at
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General
PromptBeginner5 minmarkdownQuality: 24
- usr with log scale: contains log10 of the coordinate limits
not the raw values.
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General
PromptBeginner5 minmarkdownQuality: 24
- las: 0 = parallel to axis
1 = horizontal
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General
PromptBeginner5 minmarkdownQuality: 24
- `mgp = c(3
1
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General
PromptBeginner5 minmarkdownQuality: 24
Non-obvious behaviors
gotchas
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General
PromptBeginner5 minmarkdownQuality: 24
- mai (inches)
mar (lines)
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General
PromptBeginner5 minmarkdownQuality: 28
- Setting mfrow/mfcol resets cex to 1 and mex to 1. With 2x2 layout
base cex is multiplied by 0.83; with 3+ rows/columns
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General
PromptBeginner5 minmarkdownQuality: 28
- Lognormal: meanlog and sdlog are mean/sd of the log
not of the distribution itself.
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General
PromptBeginner5 minmarkdownQuality: 24
- Returns $estimate
$p.value
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General
PromptBeginner5 minmarkdownQuality: 24
- n argument in r*() functions: if length(n) > 1
uses length(n) as the count
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General
PromptBeginner5 minmarkdownQuality: 24
- Beta: shape1 (alpha)
shape2 (beta) — no mean/sd parameterization.
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General
PromptBeginner5 minmarkdownQuality: 24
- names = TRUE by default
adding 0%
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General
PromptBeginner5 minmarkdownQuality: 28
- Nine type options (1-9). Default type = 7 (R default
linear interpolation). Type 1 = inverse of empirical CDF (SAS default). Types 4-9 are continuous; 1-3 are discontinuous.
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General
PromptBeginner5 minmarkdownQuality: 24
- method = euclidean (default). Other options: manhattan
maximum
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General
PromptBeginner5 minmarkdownQuality: 28
- prcomp uses SVD (numerically superior); princomp uses eigen on covariance (less stable
N-1 vs N scaling).
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Creative
PromptBeginner5 minmarkdownQuality: 24
- nstart > 1 recommended (e.g.
nstart = 25): runs algorithm from multiple random starts
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General
PromptBeginner5 minmarkdownQuality: 24
- Methods: holm (default)
BH (Benjamini-Hochberg FDR)
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General
PromptBeginner5 minmarkdownQuality: 24
- Paired test: paired = TRUE uses signed-rank test (Wilcoxon)
not rank-sum (Mann-Whitney).
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General
PromptBeginner5 minmarkdownQuality: 24
- For tables larger than 2x2
uses simulation (simulate.p.value = TRUE) or network algorithm.
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General
PromptBeginner5 minmarkdownQuality: 24
- exact = TRUE by default for small samples with no ties. With ties
normal approximation used.
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General
PromptBeginner5 minmarkdownQuality: 28
- simulate.p.value = TRUE: Monte Carlo with B = 2000 replicates (min p ~ 0.0005). Simulation assumes...
not the chi-sq assumption).
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General
PromptBeginner5 minmarkdownQuality: 24
- Return object includes $expected
$residuals (Pearson)
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General
PromptBeginner5 minmarkdownQuality: 28
- For goodness-of-fit: pass a vector
not a matrix. p must sum to 1 (or set rescale.p = TRUE).
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General
PromptBeginner5 minmarkdownQuality: 28
- uniroot: finds a root of f in `[lower
upper]. Requires f(lower) and f(upper)` to have opposite signs.
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