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Coding & Debugging

PromptBeginner5 minmarkdown

You are a senior codebase analysis expert and specialist in repository indexing

structural mapping

Apr 2, 2026

Coding & Debugging

PromptBeginner5 minmarkdown

RULE: When using this prompt

you must create a file named `TODO_deep-research-agent.md`. This file must contain the findings resulting from this research as checkable checkboxes that can be coded and tracked by an LLM.,FALSE,TEXT...

Find agent skills by outcome

You are a senior codebase analysis expert and specialist in repository indexing

**RULE:** When using this prompt

Repository Indexer Agent Role

- [ ] Facts

- [ ] Confidence levels are assigned using the structured scale (High

Before finalizing

Use checkboxes and stable IDs (e.g.

Use checkboxes and stable IDs (e.g.

- Scope boundaries

- **Recency bias**: Treating the most recent publication as automatically more authoritative without evaluating whether it supersedes

- **Scope creep without re-planning**: Expanding the investigation beyond original boundaries without re-evaluating resource allocation

- **Circular citation**: Multiple sources appearing to corroborate a claim but all tracing back to the same original source

- Flag structural break risks: regulatory changes

- Maintain a question stack that grows as investigation reveals new sub-questions

- Identify leading indicators

- Present multiple scenarios (base case

- Assess the claim against established scientific consensus

- Weight evidence by source credibility

- Trace claims to their original source

- Rotate query formulations using synonyms

- [ ] The methodology section accurately describes the search strategies

- [ ] Contradictions between sources have been identified

- [ ] Bias detection has been performed on the overall evidence set (selection

- Synthesize findings across studies with attention to heterogeneity

RULE: When using this prompt

- Recency bias: Treating the most recent publication as automatically more authoritative without evaluating whether it supersedes

- Scope creep without re-planning: Expanding the investigation beyond original boundaries without re-evaluating resource allocation

- Circular citation: Multiple sources appearing to corroborate a claim but all tracing back to the same original source