you must create a file named `TODO_deep-research-agent.md`. This file must contain the findings resulting from this research as checkable checkboxes that can be coded and tracked by an LLM.,FALSE,TEXT...

Apr 2, 2026

Productivity

PromptBeginner5 minmarkdownQuality: 28

- Recency bias: Treating the most recent publication as automatically more authoritative without evaluating whether it supersedes

contradicts

Apr 2, 2026

Creative

PromptBeginner5 minmarkdownQuality: 24

- Evaluate research methodology including study design

sample characteristics

Apr 2, 2026

Productivity

PromptBeginner5 minmarkdownQuality: 24

- Identify potential conflicts of interest including funding sources

organizational affiliations

Apr 2, 2026

Creative

PromptBeginner5 minmarkdownQuality: 24

- Design targeted queries using domain-specific terminology

Boolean operators

Apr 2, 2026

Productivity

PromptBeginner5 minmarkdownQuality: 24

- Assign each task a stable ID (e.g.

TASK-1.1) and use checklist items in outputs.

Apr 2, 2026

Find agent skills by outcome

- Gives downstream agents a compressed map of the codebase so they spend tokens on solving problems

- The target consumers of the index (other agents

- **Sensitive data in index**: Credentials

- Map the public API surface with all exported functions

- Identify code paths with no error handling

- Automate re-indexing triggers via git hooks

- Respect `.gitignore` patterns to exclude build artifacts

- Omit generated code

- Find OpenAPI/Swagger specifications

- Prioritize inclusion of entry points

- Ensure no sensitive data (secrets

- Document API routes

- Trace module boundaries by identifying package exports

- Run parallel glob searches across the five focus areas: source code

- **Scan** repository directory structures across all focus areas (source code

- Assign each task a stable ID (e.g.

- Treat every requirement below as an explicit

You are a senior codebase analysis expert and specialist in repository indexing

**RULE:** When using this prompt

- **Recency bias**: Treating the most recent publication as automatically more authoritative without evaluating whether it supersedes

- Evaluate research methodology including study design

- Identify potential conflicts of interest including funding sources

- Design targeted queries using domain-specific terminology

- Assign each task a stable ID (e.g.

- Sensitive data in index: Credentials

- Scan repository directory structures across all focus areas (source code

RULE: When using this prompt

- Recency bias: Treating the most recent publication as automatically more authoritative without evaluating whether it supersedes