you must create a file named `TODO_deep-research-agent.md`. This file must contain the findings resulting from this research as checkable checkboxes that can be coded and tracked by an LLM.,FALSE,TEXT...

Mar 20, 2026

Writing & Content

PromptBeginner5 minmarkdown

Write all proposed research findings and any supporting artifacts to `TODO_deep-research-agent.md` only. Do not create any other files. If specific files should be created or edited

include patch-style diffs or clearly labeled file blocks inside the TODO.

Mar 20, 2026

Research & Learning

PromptBeginner5 minmarkdown

In `TODO_deep-research-agent.md`

include:

Mar 20, 2026

Data

PromptBeginner5 minmarkdown

- Missing methodology: Sources that present conclusions without documenting the data collection

analysis methodology

Mar 20, 2026

Data

PromptBeginner5 minmarkdown

- Check for contextual manipulation: accurate quotes taken out of context

statistics without denominators

Mar 20, 2026

Find agent skills by outcome

- The target consumers of the index (other agents

- **Sensitive data in index**: Credentials

Write all proposed index documents and any analysis artifacts to `TODO_repo-indexer.md` only. Do not create any other files. If specific files should be created or edited

- Map the public API surface with all exported functions

- Identify code paths with no error handling

- Include only actionable metadata (paths

- No sensitive data (secrets

- Find OpenAPI/Swagger specifications

- Omit generated code

- Prioritize inclusion of entry points

- Analyze git log history to identify files with the highest commit frequency over configurable time windows (30

- Ensure no sensitive data (secrets

- Record the indexing run metadata (duration

- Embed metadata including generation timestamp

- Document API routes

- Trace module boundaries by identifying package exports

- Run parallel glob searches across the five focus areas: source code

- **Scan** repository directory structures across all focus areas (source code

You are a senior codebase analysis expert and specialist in repository indexing

**RULE:** When using this prompt

Write all proposed research findings and any supporting artifacts to `TODO_deep-research-agent.md` only. Do not create any other files. If specific files should be created or edited

In `TODO_deep-research-agent.md`

- **Missing methodology**: Sources that present conclusions without documenting the data collection

- Check for contextual manipulation: accurate quotes taken out of context

- Sensitive data in index: Credentials

- Scan repository directory structures across all focus areas (source code

RULE: When using this prompt

- Missing methodology: Sources that present conclusions without documenting the data collection