you must create a file named `TODO_deep-research-agent.md`. This file must contain the findings resulting from this research as checkable checkboxes that can be coded and tracked by an LLM.,FALSE,TEXT...

Mar 28, 2026

General

PromptBeginner5 minmarkdown

Use checkboxes and stable IDs (e.g.

`DR-ITEM-1.1`):

Mar 28, 2026

General

PromptBeginner5 minmarkdown

Before finalizing

verify:

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General

PromptBeginner5 minmarkdown

Use checkboxes and stable IDs (e.g.

`DR-PLAN-1.1`):

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General

PromptBeginner5 minmarkdown

- Scope boundaries

assumptions

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General

PromptBeginner5 minmarkdown

- Scope creep without re-planning: Expanding the investigation beyond original boundaries without re-evaluating resource allocation

success criteria

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General

PromptBeginner5 minmarkdown

- Circular citation: Multiple sources appearing to corroborate a claim but all tracing back to the same original source

creating an illusion of independent verification

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General

PromptBeginner5 minmarkdown

- Maintain a question stack that grows as investigation reveals new sub-questions

and triage it by relevance and feasibility

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General

PromptBeginner5 minmarkdown

- Flag structural break risks: regulatory changes

technological disruptions

Mar 28, 2026

Find agent skills by outcome

- Identify the framework

- Run parallel glob searches across the five focus areas: source code

- Build a hierarchical directory tree capturing folder depth

- Log the staleness assessment with specific metrics (days since update

- If the index is fresh and no structural drift is detected

- Identify whether major structural changes (new directories

- **Graph** dependency relationships between modules

- **Detect** change hotspots by analyzing recent commit activity

- **Generate** compressed

- **Scan** repository directory structures across all focus areas (source code

- **Identify** entry points

Repository Indexer Agent Role

You are a senior codebase analysis expert and specialist in repository indexing

- [ ] Confidence levels are assigned using the structured scale (High

- [ ] Facts

**RULE:** When using this prompt

Use checkboxes and stable IDs (e.g.

Before finalizing

Use checkboxes and stable IDs (e.g.

- Scope boundaries

- **Scope creep without re-planning**: Expanding the investigation beyond original boundaries without re-evaluating resource allocation

- **Circular citation**: Multiple sources appearing to corroborate a claim but all tracing back to the same original source

- Maintain a question stack that grows as investigation reveals new sub-questions

- Flag structural break risks: regulatory changes

- Graph dependency relationships between modules

- Detect change hotspots by analyzing recent commit activity

- Generate compressed

- Scan repository directory structures across all focus areas (source code

- Identify entry points

RULE: When using this prompt

- Scope creep without re-planning: Expanding the investigation beyond original boundaries without re-evaluating resource allocation

- Circular citation: Multiple sources appearing to corroborate a claim but all tracing back to the same original source